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We don't have an ExpressionEngine implementation just yet. Someone could get one going with the general Javascript solution or use our API to address your second point.
On EE - I disabled local comments and went straight to Disqus. I love the Disqus format, but once a customer comments - I loose all SEO rights.
The Disqus approach here is to use a community page: Ours is vorari.disqus.com
I'm not seeing that work very well.
So my options are now this:
1) Post the comments manually on our site
2) Sync the comments somehow using the disqus API
The big problem here that I can't find an easy answer to is that SEO aspect:
Do I have the comments showing up on our site in a hidden <DIV> where Disqus is the visible portion? (Meets SEO requirements). But does google penalise for having duplicate content?
Eg: Manually / Automatically synced comments to page but hidden using a DIV. Search engines find it, but when you visit the site you have the Disqus interface all the way.
I know this automatic sync feature works for WordPress & Blogger - but I still can see where the synced comments are... on the same page? hidden in a <DIV>? Not on the page at all but indexed by crawlers at another location?
The other thing I thought about was manually submitting the comments.rss feed from the disqus community site as a sitemap.
Has anyone referenced their disqus site as a CNAME?
(I've been looking JS-Kit which seems to fix a lot of things, but I really like Disqus)